Mitochondrial Phylogenomics of Modern and Ancient Equids
Identifieur interne : 004604 ( Main/Exploration ); précédent : 004603; suivant : 004605Mitochondrial Phylogenomics of Modern and Ancient Equids
Auteurs : Julia T. Vilstrup [Danemark] ; Andaine Seguin-Orlando [Danemark] ; Mathias Stiller [États-Unis] ; Aurelien Ginolhac [Danemark] ; Maanasa Raghavan [Danemark] ; Sandra C. A. Nielsen [Danemark] ; Jacobo Weinstock [Royaume-Uni] ; Duane Froese [Canada] ; Sergei K. Vasiliev [Russie] ; Nikolai D. Ovodov [Russie] ; Joel Clary [France] ; Kristofer M. Helgen [États-Unis] ; Robert C. Fleischer [États-Unis] ; Alan Cooper [Australie] ; Beth Shapiro [États-Unis] ; Ludovic Orlando [Danemark]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
The genus
Url:
DOI: 10.1371/journal.pone.0055950
PubMed: 23437078
PubMed Central: 3577844
Affiliations:
- Australie, Canada, Danemark, France, Royaume-Uni, Russie, États-Unis
- Auvergne-Rhône-Alpes, Californie, District de Columbia, Hovedstaden, Rhône-Alpes
- Copenhague, Lyon, Washington (district de Columbia)
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 002A65
- to stream Pmc, to step Curation: 002915
- to stream Pmc, to step Checkpoint: 001A13
- to stream Ncbi, to step Merge: 001148
- to stream Ncbi, to step Curation: 001148
- to stream Ncbi, to step Checkpoint: 001148
- to stream Main, to step Merge: 004706
- to stream Main, to step Curation: 004604
Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Mitochondrial Phylogenomics of Modern and Ancient Equids</title>
<author><name sortKey="Vilstrup, Julia T" sort="Vilstrup, Julia T" uniqKey="Vilstrup J" first="Julia T." last="Vilstrup">Julia T. Vilstrup</name>
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<author><name sortKey="Ginolhac, Aurelien" sort="Ginolhac, Aurelien" uniqKey="Ginolhac A" first="Aurelien" last="Ginolhac">Aurelien Ginolhac</name>
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<author><name sortKey="Vasiliev, Sergei K" sort="Vasiliev, Sergei K" uniqKey="Vasiliev S" first="Sergei K." last="Vasiliev">Sergei K. Vasiliev</name>
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<author><name sortKey="Helgen, Kristofer M" sort="Helgen, Kristofer M" uniqKey="Helgen K" first="Kristofer M." last="Helgen">Kristofer M. Helgen</name>
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<author><name sortKey="Fleischer, Robert C" sort="Fleischer, Robert C" uniqKey="Fleischer R" first="Robert C." last="Fleischer">Robert C. Fleischer</name>
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<author><name sortKey="Cooper, Alan" sort="Cooper, Alan" uniqKey="Cooper A" first="Alan" last="Cooper">Alan Cooper</name>
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</nlm:aff>
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<author><name sortKey="Shapiro, Beth" sort="Shapiro, Beth" uniqKey="Shapiro B" first="Beth" last="Shapiro">Beth Shapiro</name>
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</nlm:aff>
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<author><name sortKey="Orlando, Ludovic" sort="Orlando, Ludovic" uniqKey="Orlando L" first="Ludovic" last="Orlando">Ludovic Orlando</name>
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<front><div type="abstract" xml:lang="en"><p>The genus <italic>Equus</italic>
is richly represented in the fossil record, yet our understanding of taxonomic relationships within this genus remains limited. To estimate the phylogenetic relationships among modern horses, zebras, asses and donkeys, we generated the first data set including complete mitochondrial sequences from all seven extant lineages within the genus <italic>Equus</italic>
. Bayesian and Maximum Likelihood phylogenetic inference confirms that zebras are monophyletic within the genus, and the Plains and Grevy’s zebras form a well-supported monophyletic group. Using ancient DNA techniques, we further characterize the complete mitochondrial genomes of three extinct equid lineages (the New World stilt-legged horses, NWSLH; the subgenus <italic>Sussemionus</italic>
; and the Quagga, <italic>Equus quagga quagga</italic>
). Comparisons with extant taxa confirm the NWSLH as being part of the caballines, and the Quagga and Plains zebras as being conspecific. However, the evolutionary relationships among the non-caballine lineages, including the now-extinct subgenus <italic>Sussemionus,</italic>
remain unresolved, most likely due to extremely rapid radiation within this group. The closest living outgroups (rhinos and tapirs) were found to be too phylogenetically distant to calibrate reliable molecular clocks. Additional mitochondrial genome sequence data, including radiocarbon dated ancient equids, will be required before revisiting the exact timing of the lineage radiation leading up to modern equids, which for now were found to have possibly shared a common ancestor as far as up to 4 Million years ago (Mya).</p>
</div>
</front>
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<author><name sortKey="Lanfear, R" uniqKey="Lanfear R">R Lanfear</name>
</author>
<author><name sortKey="Bromham, L" uniqKey="Bromham L">L Bromham</name>
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<author><name sortKey="Phillips, Mj" uniqKey="Phillips M">MJ Phillips</name>
</author>
<author><name sortKey="Soubrier, J" uniqKey="Soubrier J">J Soubrier</name>
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<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Ho, Syw" uniqKey="Ho S">SYW Ho</name>
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<author><name sortKey="Saarma, U" uniqKey="Saarma U">U Saarma</name>
</author>
<author><name sortKey="Barnett, R" uniqKey="Barnett R">R Barnett</name>
</author>
<author><name sortKey="Haile, J" uniqKey="Haile J">J Haile</name>
</author>
<author><name sortKey="Shapiro, B" uniqKey="Shapiro B">B Shapiro</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Groves, C" uniqKey="Groves C">C Groves</name>
</author>
<author><name sortKey="Mazak, V" uniqKey="Mazak V">V Mazák</name>
</author>
</analytic>
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</author>
<author><name sortKey="Kubickova, S" uniqKey="Kubickova S">S Kubickova</name>
</author>
<author><name sortKey="Horin, P" uniqKey="Horin P">P Horin</name>
</author>
<author><name sortKey="Vodi Ka, R" uniqKey="Vodi Ka R">R Vodička</name>
</author>
<author><name sortKey="Rubes, J" uniqKey="Rubes J">J Rubes</name>
</author>
</analytic>
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<author><name sortKey="Galindo, J" uniqKey="Galindo J">J Galindo</name>
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<affiliations><list><country><li>Australie</li>
<li>Canada</li>
<li>Danemark</li>
<li>France</li>
<li>Royaume-Uni</li>
<li>Russie</li>
<li>États-Unis</li>
</country>
<region><li>Auvergne-Rhône-Alpes</li>
<li>Californie</li>
<li>District de Columbia</li>
<li>Hovedstaden</li>
<li>Rhône-Alpes</li>
</region>
<settlement><li>Copenhague</li>
<li>Lyon</li>
<li>Washington (district de Columbia)</li>
</settlement>
</list>
<tree><country name="Danemark"><region name="Hovedstaden"><name sortKey="Vilstrup, Julia T" sort="Vilstrup, Julia T" uniqKey="Vilstrup J" first="Julia T." last="Vilstrup">Julia T. Vilstrup</name>
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<name sortKey="Ginolhac, Aurelien" sort="Ginolhac, Aurelien" uniqKey="Ginolhac A" first="Aurelien" last="Ginolhac">Aurelien Ginolhac</name>
<name sortKey="Nielsen, Sandra C A" sort="Nielsen, Sandra C A" uniqKey="Nielsen S" first="Sandra C. A." last="Nielsen">Sandra C. A. Nielsen</name>
<name sortKey="Orlando, Ludovic" sort="Orlando, Ludovic" uniqKey="Orlando L" first="Ludovic" last="Orlando">Ludovic Orlando</name>
<name sortKey="Raghavan, Maanasa" sort="Raghavan, Maanasa" uniqKey="Raghavan M" first="Maanasa" last="Raghavan">Maanasa Raghavan</name>
<name sortKey="Seguin Orlando, Andaine" sort="Seguin Orlando, Andaine" uniqKey="Seguin Orlando A" first="Andaine" last="Seguin-Orlando">Andaine Seguin-Orlando</name>
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<country name="États-Unis"><region name="Californie"><name sortKey="Stiller, Mathias" sort="Stiller, Mathias" uniqKey="Stiller M" first="Mathias" last="Stiller">Mathias Stiller</name>
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<name sortKey="Fleischer, Robert C" sort="Fleischer, Robert C" uniqKey="Fleischer R" first="Robert C." last="Fleischer">Robert C. Fleischer</name>
<name sortKey="Helgen, Kristofer M" sort="Helgen, Kristofer M" uniqKey="Helgen K" first="Kristofer M." last="Helgen">Kristofer M. Helgen</name>
<name sortKey="Shapiro, Beth" sort="Shapiro, Beth" uniqKey="Shapiro B" first="Beth" last="Shapiro">Beth Shapiro</name>
</country>
<country name="Royaume-Uni"><noRegion><name sortKey="Weinstock, Jacobo" sort="Weinstock, Jacobo" uniqKey="Weinstock J" first="Jacobo" last="Weinstock">Jacobo Weinstock</name>
</noRegion>
</country>
<country name="Canada"><noRegion><name sortKey="Froese, Duane" sort="Froese, Duane" uniqKey="Froese D" first="Duane" last="Froese">Duane Froese</name>
</noRegion>
</country>
<country name="Russie"><noRegion><name sortKey="Vasiliev, Sergei K" sort="Vasiliev, Sergei K" uniqKey="Vasiliev S" first="Sergei K." last="Vasiliev">Sergei K. Vasiliev</name>
</noRegion>
<name sortKey="Ovodov, Nikolai D" sort="Ovodov, Nikolai D" uniqKey="Ovodov N" first="Nikolai D." last="Ovodov">Nikolai D. Ovodov</name>
</country>
<country name="France"><region name="Auvergne-Rhône-Alpes"><name sortKey="Clary, Joel" sort="Clary, Joel" uniqKey="Clary J" first="Joel" last="Clary">Joel Clary</name>
</region>
</country>
<country name="Australie"><noRegion><name sortKey="Cooper, Alan" sort="Cooper, Alan" uniqKey="Cooper A" first="Alan" last="Cooper">Alan Cooper</name>
</noRegion>
</country>
</tree>
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</record>
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